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ajibadedapo/flowproof-mcp

Run reproducible bioinformatics pipelines from an AI assistant over MCP, with verifiable provenance

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Our verdict

Not reviewed yet

We have not reviewed ajibadedapo/flowproof-mcp yet

No one at Enterprise DNA has checked this listing against its sources. The description comes from public listings gathered automatically. Any fact below shows where it came from and when it was last checked.

How we review records

From the listing

About ajibadedapo/flowproof-mcp

FlowProof-MCP is an MCP server that lets AI assistants run reproducible bioinformatics pipelines while tracking provenance. It provides a standardized interface for executing workflows and verifying their results.

Best for

Researchers seeking AI-assisted, reproducible bioinformatics pipelines via MCP

Use cases

  • Run bioinformatics pipelines directly from an AI assistant
  • Ensure reproducibility with provenance tracking
  • Integrate AI-driven analysis into existing MCP workflows

Notes

1 stars on GitHub. Last updated 2026-08-18. Licensed MIT.

Pros

  • Emphasizes reproducibility and provenance
  • Enables natural-language-driven pipeline execution
  • Leverages the MCP standard for AI tool integration

Cons

  • Very low community adoption (1 star)
  • Requires an MCP-compatible AI assistant to be useful
  • Limited documentation and examples due to early stage

Key facts

What we have checked

Days since the last commit
68
Checked GitHub
GitHub forks
0
Checked GitHub
GitHub stars
2
Checked GitHub
Open issues
0
Checked GitHub
Releases in the last 90 days
3
Checked GitHub

Each value shows when we last confirmed it and where it came from. Values we have not confirmed are left out, never guessed.

How to use

How to set it up

As the listing publishes it. We have not run this install.

Tools exposed

  • list_pipelines
  • describe_pipeline
  • run_pipeline
  • get_run_status
  • get_results
  • get_provenance
  • ont-read-stats
  • variant-call-short

Clients the listing names (not checked here)

Claude Desktop, Cursor

Example client config

{
  "mcpServers": {
    "flowproof": {
      "command": "uvx",
      "args": [
        "flowproof-mcp"
      ]
    }
  }
}

Install

Add ajibadedapo/flowproof-mcp to your client

Not verified yet

No install recipe yet. We write one for Claude Code, Claude Desktop, Cursor, VS Code, Codex and ChatGPT when the server is in the official MCP registry with a package or remote address we can use.

Until then, follow the project's own README, or the setup the listing publishes under How to set it up.

Works with

What ajibadedapo/flowproof-mcp connects to

No confirmed connections yet. A product appears here when the server's registry name, repo, homepage or name ties it to that product, and a client appears when we have an install recipe for it.

Health and security

Is ajibadedapo/flowproof-mcp looked after, and what do its setup files show

Health score

52 out of 100

Does someone look after this repository? It does not say the code is good or safe. Worked out from GitHub signals checked . How it is worked out

PartPointsWhat we saw
Recent activity26.6 of 30Last push 68 days ago
Releases15 of 153 releases in 90 days
Issue repliesNot countedThe latest check has no issue response reading (fewer than 3 measured issues, or issues switched off)
Maintainer0 of 15Owned by a single user
Official source0 of 20Community server

Sources

Where this comes from

  • GitHubRegistry

    Checked · Days since the last commit, GitHub forks, GitHub stars, Open issues, Releases in the last 90 days

A source shows what was published when we checked it. It does not certify security, performance or a working installation. Read our method.

Changelog

What changed

No changes recorded yet. Releases, price changes and deprecations appear here, with their dates, once we track them for this record.

Pairs with

Other entries in the index that connect to this one. Click through to see the chain.

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