dnaerys/onekgpd-mcp

Overview

A Java-based MCP server that provides access to the 1000 Genomes Project dataset. It allows AI agents to query genomic variant data through the Model Context Protocol.

Best for

Best for
Developers building AI agents that need programmatic access to human genomic variation data

Use cases

• Querying population-level genomic variant frequencies
• Integrating 1000 Genomes data into AI-driven bioinformatics workflows
• Building agentic tools that retrieve human genetic variation on demand

Notes

A Java-based MCP server that provides access to the 1000 Genomes Project dataset. It allows AI agents to query genomic variant data through the Model Context Protocol.

0 stars on GitHub. Last updated 2026-04-06. Licensed Apache-2.0.

Use cases

• Querying population-level genomic variant frequencies
• Integrating 1000 Genomes data into AI-driven bioinformatics workflows
• Building agentic tools that retrieve human genetic variation on demand

Pros

• Direct access to a major public genomics dataset via a standard protocol
• Written in Java, suitable for JVM-based ecosystems
• Lightweight and focused on a single data source

Cons

• Zero stars and no community traction yet
• Requires running a custom MCP server, adding infrastructure overhead
• Limited to the 1000 Genomes Project dataset only

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