wso2/fhir-mcp-server

Overview

A Python server that exposes any FHIR Server or API as an MCP Server. It allows AI agents and tools to query healthcare data using the Model Context Protocol.

Best for

Best for
Developers building AI tools that need structured healthcare data access

Use cases

• Querying patient records via natural language
• Integrating FHIR data with AI assistants
• Building healthcare chatbots that access medical data

How to use

Install

uvx fhir-mcp-server

Tools exposed

• uv
• docker
• docker-compose

Tested with

VS Code, Claude Desktop, MCP Inspector

Example client config

export FHIR_SERVER_BASE_URL=""\nexport FHIR_SERVER_CLIENT_ID=""\nexport FHIR_SERVER_CLIENT_SECRET=""\nexport FHIR_SERVER_SCOPES=""\nexport FHIR_MCP_HOST="localhost"\nexport FHIR_MCP_PORT="8000"

Notes

A Python server that exposes any FHIR Server or API as an MCP Server. It allows AI agents and tools to query healthcare data using the Model Context Protocol.

122 stars on GitHub. Last updated 2026-05-29. Licensed Apache-2.0.

Use cases

• Querying patient records via natural language
• Integrating FHIR data with AI assistants
• Building healthcare chatbots that access medical data

Pros

• Open source with 122 GitHub stars
• Written in Python for easy integration
• Leverages the FHIR standard for healthcare data

Cons

• Relatively low community adoption
• Requires a running FHIR server to connect to
• May need custom configuration for complex queries

Indexed from awesome-mcp-servers-punkpeye and enriched against its public facts.